STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACE05385.1KEGG: pvi:Cvib_0912 hypothetical protein. (150 aa)    
Predicted Functional Partners:
ACE05384.1
KEGG: abo:ABO_1656 hypothetical protein.
 
     0.587
ACE04414.1
PFAM: C4-dicarboxylate transporter/malic acid transport protein; KEGG: pvi:Cvib_0825 C4-dicarboxylate transporter/malic acid transport protein.
 
     0.586
ACE05153.1
TIGRFAM: bacteriochlorophyll 4-vinyl reductase; KEGG: cch:Cag_1810 bacteriochlorophyll 4-vinyl reductase.
  
     0.533
ACE03884.1
PFAM: 2-vinyl bacteriochlorophyllide hydratase; KEGG: pvi:Cvib_1239 2-vinyl bacteriochlorophyllide hydratase.
  
     0.414
ACE03237.1
PFAM: 2-vinyl bacteriochlorophyllide hydratase; KEGG: pvi:Cvib_0370 2-vinyl bacteriochlorophyllide hydratase.
  
     0.407
ACE03148.1
TIGRFAM: chlorophyllide reductase subunit Z; PFAM: oxidoreductase/nitrogenase component 1; protein of unknown function DUF1197; KEGG: plt:Plut_0124 chlorophyllide reductase subunit Z.
  
     0.403
Your Current Organism:
Chlorobium phaeobacteroides BS1
NCBI taxonomy Id: 331678
Other names: C. phaeobacteroides BS1, Chlorobium phaeobacteroides MN1, Chlorobium phaeobacteroides str. BS1, Chlorobium phaeobacteroides strain BS1
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