Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ACE05392.1PFAM: helicase domain protein; KEGG: sat:SYN_00017 superfamily II DNA/RNA helicase, SNF2 family. (774 aa)    
Predicted Functional Partners:
ACE05389.1
KEGG: rrs:RoseRS_3563 ATPase (AAA+ superfamily)-like protein.
 
     0.921
ACE05390.1
PFAM: protein of unknown function DUF1156; KEGG: noc:Noc_0655 protein of unknown function DUF1156.
 
     0.921
ACE04408.1
PFAM: nuclear protein SET; KEGG: cte:CT0952 hypothetical protein.
   
 0.711
ACE05391.1
PFAM: protein of unknown function DUF1016; KEGG: psp:PSPPH_0603 hypothetical protein.
 
     0.704
ACE03042.1
Hypothetical protein; KEGG: sco:SCO3294 transferase.
    
 0.695
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
 0.660
ACE02996.1
PFAM: DNA polymerase B exonuclease; DNA polymerase B region; SMART: DNA-directed DNA polymerase B; KEGG: cte:CT2284 DNA polymerase family B protein.
  
 0.646
recD2
Helicase, RecD/TraA family; DNA-dependent ATPase and ATP-dependent 5'-3' DNA helicase. Has no activity on blunt DNA or DNA with 3'-overhangs, requires at least 10 bases of 5'-ssDNA for helicase activity; Belongs to the RecD family. RecD-like subfamily.
  
 0.594
ACE05388.1
Hypothetical protein.
       0.593
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.587
Your Current Organism:
Chlorobium phaeobacteroides BS1
NCBI taxonomy Id: 331678
Other names: C. phaeobacteroides BS1, Chlorobium phaeobacteroides MN1, Chlorobium phaeobacteroides str. BS1, Chlorobium phaeobacteroides strain BS1
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