STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDP65906.1Polysaccharide deacetylase family protein; COG0726 Predicted xylanase/chitin deacetylase. (299 aa)    
Predicted Functional Partners:
EDP66612.1
COG3195 Uncharacterized protein conserved in bacteria.
 
  0.939
EDP64752.1
Glycosyl transferase, family 2.
  
 
 0.626
EDP63545.1
Hypothetical protein; COG0463 Glycosyltransferases involved in cell wall biogenesis.
  
 
 0.593
EDP65907.1
Regulatory protein, LysR:LysR, substrate-binding; COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
   
   0.566
EDP65908.1
COG2003 DNA repair proteins; Belongs to the UPF0758 family.
       0.473
EDP63277.1
Polysaccharide deacetylase.
 
  
 
0.459
EDP65795.1
Polysaccharide deacetylase family protein, putative; COG0726 Predicted xylanase/chitin deacetylase.
 
  
 
0.455
EDP63279.1
Polysaccharide deacetylase family protein, putative; COG0726 Predicted xylanase/chitin deacetylase.
 
  
 
0.447
Your Current Organism:
alpha proteobacterium BAL199
NCBI taxonomy Id: 331869
Other names: a. proteobacterium BAL199
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