STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDP63999.1COG1309 Transcriptional regulator. (191 aa)    
Predicted Functional Partners:
EDP63998.1
COG2350 Uncharacterized protein conserved in bacteria.
 
     0.906
EDP63997.1
COG2818 3-methyladenine DNA glycosylase.
 
     0.697
EDP65021.1
Hypothetical protein; COG2070 Dioxygenases related to 2-nitropropane dioxygenase.
  
     0.482
EDP65049.1
Transcriptional regulator, AraC family protein; COG2207 AraC-type DNA-binding domain-containing proteins.
  
     0.464
pth
peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family.
   
    0.443
EDP64000.1
COG0531 Amino acid transporters.
       0.422
EDP65654.1
COG0642 Signal transduction histidine kinase.
    
 
 0.418
EDP63592.1
Non-ribosomal peptide synthetase.
      
 0.414
Your Current Organism:
alpha proteobacterium BAL199
NCBI taxonomy Id: 331869
Other names: a. proteobacterium BAL199
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