STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDP62086.1Transcriptional regulator, TetR family protein; COG1309 Transcriptional regulator. (213 aa)    
Predicted Functional Partners:
EDP62085.1
COG1566 Multidrug resistance efflux pump.
 
   
 0.575
EDP61233.1
Hypothetical protein; COG1309 Transcriptional regulator.
  
     0.524
EDP63592.1
Non-ribosomal peptide synthetase.
  
   
 0.520
EDP62575.1
Transcriptional regulator, TetR family protein; COG1309 Transcriptional regulator.
  
     0.486
EDP63721.1
Rieske (2Fe-2S) protein; COG4638 Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit.
  
  
 0.448
pth
peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family.
   
    0.443
EDP65654.1
COG0642 Signal transduction histidine kinase.
    
 
 0.418
Your Current Organism:
alpha proteobacterium BAL199
NCBI taxonomy Id: 331869
Other names: a. proteobacterium BAL199
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