STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lysSLysyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family. (531 aa)    
Predicted Functional Partners:
EDP63026.1
COG3820 Uncharacterized protein conserved in bacteria.
  
    0.774
EDP63361.1
Transporter; COG0392 Predicted integral membrane protein.
    
 0.714
EDP65687.1
COG3814 Uncharacterized protein conserved in bacteria.
  
     0.705
rpsD
Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.
  
    0.580
nusG-2
Transcription antiterminator; Participates in transcription elongation, termination and antitermination.
   
    0.572
EDP66871.1
Helicase-like protein; COG0513 Superfamily II DNA and RNA helicases.
  
     0.545
era
GTP-binding protein Era; Involved in DNA repair and RecF pathway recombination.
  
     0.544
nadK
NAD(+) kinase; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP.
  
     0.533
EDP66776.1
Putative N-methyl-l-tryptophan oxidase; COG0665 Glycine/D-amino acid oxidases (deaminating).
       0.533
EDP67012.1
CobT protein; COG4547 Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase).
  
     0.533
Your Current Organism:
alpha proteobacterium BAL199
NCBI taxonomy Id: 331869
Other names: a. proteobacterium BAL199
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