Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDP66888.1COG0582 Integrase; Belongs to the 'phage' integrase family. (401 aa)    
Predicted Functional Partners:
EDP64447.1
COG0582 Integrase.
  
  
  0.873
EDP64456.1
COG0582 Integrase.
  
  
  0.873
EDP63486.1
Hypothetical protein; COG0582 Integrase.
  
  
  0.870
EDP64863.1
Hypothetical protein; COG0582 Integrase.
  
  
  0.870
EDP61505.1
1-deoxy-D-xylulose-5-phosphate synthase; COG0582 Integrase.
  
  
  0.870
EDP61123.1
Hypothetical protein; COG0582 Integrase.
  
  
  0.870
EDP64866.1
Hypothetical protein; COG0582 Integrase.
  
  
  0.869
EDP61140.1
Hypothetical protein; COG4974 Site-specific recombinase XerD.
  
  
  0.869
EDP64448.1
Integrase.
  
  
  0.869
EDP66889.1
Resolvase-like protein; COG1961 Site-specific recombinases, DNA invertase Pin homologs.
 
    0.810
Your Current Organism:
alpha proteobacterium BAL199
NCBI taxonomy Id: 331869
Other names: a. proteobacterium BAL199
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