STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDP67040.1CDP-glucose 4,6-dehydratase; COG0451 Nucleoside-diphosphate-sugar epimerases. (378 aa)    
Predicted Functional Partners:
EDP67039.1
alpha-D-glucose-1-phosphate cytidylyltransferase; COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon).
 
 0.986
EDP67042.1
Hypothetical protein; COG0500 SAM-dependent methyltransferases.
 
  
  0.899
EDP67041.1
CDP-4-dehydro-6-deoxy-D-glucose 3-epimerase; COG1898 dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes.
 
 
 0.898
secA
Preprotein translocase ATPase subunit; COG3510 Cephalosporin hydroxylase.
 
     0.753
EDP64283.1
COG0067 Glutamate synthase domain 1.
    
  0.730
EDP63592.1
Non-ribosomal peptide synthetase.
    
 0.698
rplV
50S ribosomal protein L22; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.
   
  0.683
rpsN
30S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.
   
  0.682
rpsL-2
Ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.
   
 0.674
EDP61636.1
Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; COG0836 Mannose-1-phosphate guanylyltransferase; Belongs to the mannose-6-phosphate isomerase type 2 family.
  
 
 0.668
Your Current Organism:
alpha proteobacterium BAL199
NCBI taxonomy Id: 331869
Other names: a. proteobacterium BAL199
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