Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
EDP64824.1 | EDP66130.1 | BAL199_05169 | BAL199_24324 | Hypothetical protein; COG0477 Permeases of the major facilitator superfamily. | COG0477 Permeases of the major facilitator superfamily. | 0.552 |
EDP66128.1 | EDP66130.1 | BAL199_24314 | BAL199_24324 | NOL1/NOP2/sun family protein; COG0144 tRNA and rRNA cytosine-C5-methylases. | COG0477 Permeases of the major facilitator superfamily. | 0.489 |
EDP66128.1 | EDP66131.1 | BAL199_24314 | BAL199_24329 | NOL1/NOP2/sun family protein; COG0144 tRNA and rRNA cytosine-C5-methylases. | Amidase; COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases. | 0.412 |
EDP66128.1 | rsmI | BAL199_24314 | BAL199_24319 | NOL1/NOP2/sun family protein; COG0144 tRNA and rRNA cytosine-C5-methylases. | Hypothetical protein; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA. | 0.815 |
EDP66130.1 | EDP64824.1 | BAL199_24324 | BAL199_05169 | COG0477 Permeases of the major facilitator superfamily. | Hypothetical protein; COG0477 Permeases of the major facilitator superfamily. | 0.552 |
EDP66130.1 | EDP66128.1 | BAL199_24324 | BAL199_24314 | COG0477 Permeases of the major facilitator superfamily. | NOL1/NOP2/sun family protein; COG0144 tRNA and rRNA cytosine-C5-methylases. | 0.489 |
EDP66130.1 | EDP66131.1 | BAL199_24324 | BAL199_24329 | COG0477 Permeases of the major facilitator superfamily. | Amidase; COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases. | 0.499 |
EDP66130.1 | rsmI | BAL199_24324 | BAL199_24319 | COG0477 Permeases of the major facilitator superfamily. | Hypothetical protein; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA. | 0.489 |
EDP66131.1 | EDP66128.1 | BAL199_24329 | BAL199_24314 | Amidase; COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases. | NOL1/NOP2/sun family protein; COG0144 tRNA and rRNA cytosine-C5-methylases. | 0.412 |
EDP66131.1 | EDP66130.1 | BAL199_24329 | BAL199_24324 | Amidase; COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases. | COG0477 Permeases of the major facilitator superfamily. | 0.499 |
rsmI | EDP66128.1 | BAL199_24319 | BAL199_24314 | Hypothetical protein; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA. | NOL1/NOP2/sun family protein; COG0144 tRNA and rRNA cytosine-C5-methylases. | 0.815 |
rsmI | EDP66130.1 | BAL199_24319 | BAL199_24324 | Hypothetical protein; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA. | COG0477 Permeases of the major facilitator superfamily. | 0.489 |