Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
NTH1 | VFPBJ_04935 | A0A179GY24 | A0A179HSI6 | Endonuclease III homolog; Bifunctional DNA N-glycosylase with associated apurinic/apyrimidinic (AP) lyase function that catalyzes the first step in base excision repair (BER), the primary repair pathway for the repair of oxidative DNA damage. The DNA N-glycosylase activity releases the damaged DNA base from DNA by cleaving the N-glycosidic bond, leaving an AP site. The AP lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination. Primarily recognizes and repairs oxidative base damage of pyrimidines. | Fe-containing alcohol dehydrogenase. | 0.991 |
NTH1 | VFPFJ_11014 | A0A179GY24 | A0A179G268 | Endonuclease III homolog; Bifunctional DNA N-glycosylase with associated apurinic/apyrimidinic (AP) lyase function that catalyzes the first step in base excision repair (BER), the primary repair pathway for the repair of oxidative DNA damage. The DNA N-glycosylase activity releases the damaged DNA base from DNA by cleaving the N-glycosidic bond, leaving an AP site. The AP lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination. Primarily recognizes and repairs oxidative base damage of pyrimidines. | Alcohol dehydrogenase. | 0.478 |
VFPBJ_00311 | VFPFJ_11014 | A0A179H9R0 | A0A179G268 | MADS box protein. | Alcohol dehydrogenase. | 0.446 |
VFPBJ_04935 | NTH1 | A0A179HSI6 | A0A179GY24 | Fe-containing alcohol dehydrogenase. | Endonuclease III homolog; Bifunctional DNA N-glycosylase with associated apurinic/apyrimidinic (AP) lyase function that catalyzes the first step in base excision repair (BER), the primary repair pathway for the repair of oxidative DNA damage. The DNA N-glycosylase activity releases the damaged DNA base from DNA by cleaving the N-glycosidic bond, leaving an AP site. The AP lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination. Primarily recognizes and repairs oxidative base damage of pyrimidines. | 0.991 |
VFPBJ_04935 | VFPFJ_11014 | A0A179HSI6 | A0A179G268 | Fe-containing alcohol dehydrogenase. | Alcohol dehydrogenase. | 0.709 |
VFPBJ_07127 | VFPFJ_11014 | A0A179HUW9 | A0A179G268 | Protein kinase regulator Ste50. | Alcohol dehydrogenase. | 0.568 |
VFPFJ_11014 | NTH1 | A0A179G268 | A0A179GY24 | Alcohol dehydrogenase. | Endonuclease III homolog; Bifunctional DNA N-glycosylase with associated apurinic/apyrimidinic (AP) lyase function that catalyzes the first step in base excision repair (BER), the primary repair pathway for the repair of oxidative DNA damage. The DNA N-glycosylase activity releases the damaged DNA base from DNA by cleaving the N-glycosidic bond, leaving an AP site. The AP lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination. Primarily recognizes and repairs oxidative base damage of pyrimidines. | 0.478 |
VFPFJ_11014 | VFPBJ_00311 | A0A179G268 | A0A179H9R0 | Alcohol dehydrogenase. | MADS box protein. | 0.446 |
VFPFJ_11014 | VFPBJ_04935 | A0A179G268 | A0A179HSI6 | Alcohol dehydrogenase. | Fe-containing alcohol dehydrogenase. | 0.709 |
VFPFJ_11014 | VFPBJ_07127 | A0A179G268 | A0A179HUW9 | Alcohol dehydrogenase. | Protein kinase regulator Ste50. | 0.568 |