Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
PCL_00618 | PCL_03664 | A0A179H7F3 | A0A179GLA5 | Glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. | Nitrite reductase. | 0.922 |
PCL_00618 | PCL_09433 | A0A179H7F3 | A0A179GR54 | Glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. | Nitrilase. | 0.923 |
PCL_00618 | VFPBJ_07149 | A0A179H7F3 | A0A179HUU8 | Glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. | NAD-specific glutamate dehydrogenase; NAD(+)-dependent glutamate dehydrogenase which degrades glutamate to ammonia and alpha-ketoglutarate. Belongs to the Glu/Leu/Phe/Val dehydrogenases family. | 0.962 |
PCL_00618 | VFPBJ_10978 | A0A179H7F3 | A0A179FQL5 | Glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. | Glutamine synthetase; Belongs to the glutamine synthetase family. | 0.962 |
PCL_00618 | VFPFJ_09306 | A0A179H7F3 | A0A179GU92 | Glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. | Formamidase. | 0.902 |
PCL_00618 | VFPFJ_09444 | A0A179H7F3 | A0A179GUJ0 | Glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. | Glutamine synthetase; Belongs to the glutamine synthetase family. | 0.974 |
PCL_03345 | VFPBJ_00319 | A0A179GNN7 | A0A179HA24 | Oxalate decarboxylase oxdC. | Malate synthase; Belongs to the malate synthase family. | 0.800 |
PCL_03345 | VFPFJ_08114 | A0A179GNN7 | A0A179H6B2 | Oxalate decarboxylase oxdC. | Formate dehydrogenase; Catalyzes the NAD(+)-dependent oxidation of formate to carbon dioxide. Formate oxidation is the final step in the methanol oxidation pathway in methylotrophic microorganisms. Has a role in the detoxification of exogenous formate in non-methylotrophic organisms. Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. FDH subfamily. | 0.901 |
PCL_03345 | VFPFJ_09306 | A0A179GNN7 | A0A179GU92 | Oxalate decarboxylase oxdC. | Formamidase. | 0.900 |
PCL_03664 | PCL_00618 | A0A179GLA5 | A0A179H7F3 | Nitrite reductase. | Glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. | 0.922 |
PCL_03664 | PCL_09433 | A0A179GLA5 | A0A179GR54 | Nitrite reductase. | Nitrilase. | 0.926 |
PCL_03664 | VFPBJ_07149 | A0A179GLA5 | A0A179HUU8 | Nitrite reductase. | NAD-specific glutamate dehydrogenase; NAD(+)-dependent glutamate dehydrogenase which degrades glutamate to ammonia and alpha-ketoglutarate. Belongs to the Glu/Leu/Phe/Val dehydrogenases family. | 0.920 |
PCL_03664 | VFPBJ_10978 | A0A179GLA5 | A0A179FQL5 | Nitrite reductase. | Glutamine synthetase; Belongs to the glutamine synthetase family. | 0.946 |
PCL_03664 | VFPFJ_09306 | A0A179GLA5 | A0A179GU92 | Nitrite reductase. | Formamidase. | 0.900 |
PCL_03664 | VFPFJ_09444 | A0A179GLA5 | A0A179GUJ0 | Nitrite reductase. | Glutamine synthetase; Belongs to the glutamine synthetase family. | 0.943 |
PCL_09433 | PCL_00618 | A0A179GR54 | A0A179H7F3 | Nitrilase. | Glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. | 0.923 |
PCL_09433 | PCL_03664 | A0A179GR54 | A0A179GLA5 | Nitrilase. | Nitrite reductase. | 0.926 |
PCL_09433 | VFPBJ_07149 | A0A179GR54 | A0A179HUU8 | Nitrilase. | NAD-specific glutamate dehydrogenase; NAD(+)-dependent glutamate dehydrogenase which degrades glutamate to ammonia and alpha-ketoglutarate. Belongs to the Glu/Leu/Phe/Val dehydrogenases family. | 0.921 |
PCL_09433 | VFPBJ_10978 | A0A179GR54 | A0A179FQL5 | Nitrilase. | Glutamine synthetase; Belongs to the glutamine synthetase family. | 0.907 |
PCL_09433 | VFPFJ_09306 | A0A179GR54 | A0A179GU92 | Nitrilase. | Formamidase. | 0.914 |
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