STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VFPBJ_04573Survival motor neuron protein (SMN) domain-containing protein. (149 aa)    
Predicted Functional Partners:
PCL_07632
Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.
   
 0.978
VFPFJ_08027
Small nuclear ribonucleoprotein Sm D2.
   
 0.963
VFPBJ_10237
Nucleoporin NUP49/NSP49.
   
 
  0.946
VFPFJ_09391
RNase3 domain-containingprotein.
    
  0.946
VFPBJ_02461
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.940
PCL_09749
Small nuclear ribonucleoprotein G.
   
 0.919
VFPBJ_09964
LSM domain-containing protein.
   
 0.915
VFPFJ_03615
ER protein pkr1 domain-containing protein.
   
 0.867
VFPFJ_08235
Small nuclear ribonucleoprotein Sm D3.
    
 0.814
VFPBJ_05504
Uncharacterized protein.
   
 0.793
Your Current Organism:
Purpureocillium lilacinum
NCBI taxonomy Id: 33203
Other names: ATCC 10114, CBS 284.36, CCRC 31616, CCRC:31616, DSM 846, IMI 027830, JCM 9332, NCTC 584, NRRL 895, P. lilacinum, Paecilomyces lilacinum, Paecilomyces lilacinus, Penicillium lilacinum, Purpureocillium lilacinum (Thom) Luangsa-ard, Houbraken, Hywel-Jones & Samson 2011, QM 7592, VKM F-3193
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