STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VFPFJ_09104ATP-dependent RNA helicase ROK1. (704 aa)    
Predicted Functional Partners:
VFPFJ_01305
Sas10/Utp3 family protein.
   
 0.998
VFPBJ_01921
KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.
   
 0.994
VFPFJ_04758
rRNA biogenesis protein RRP5.
   
 0.994
VFPFJ_02243
U3 small nucleolar RNA-associated protein 22.
   
 0.991
VFPFJ_05330
rRNA maturation protein.
   
 
 0.989
PCL_09004
U3 small nucleolar RNA associated protein.
   
 0.983
VFPFJ_03802
Small nucleolar ribonucleoprotein complex subunit.
   
 
 0.983
PCL_00905
ATP-dependent rRNA helicase RRP3; Belongs to the DEAD box helicase family.
  
0.980
VFPBJ_03410
ATP-dependent RNA helicase DBP8; Belongs to the DEAD box helicase family.
  
0.977
VFPFJ_04969
Heat repeat protein.
   
 
 0.977
Your Current Organism:
Purpureocillium lilacinum
NCBI taxonomy Id: 33203
Other names: ATCC 10114, CBS 284.36, CCRC 31616, CCRC:31616, DSM 846, IMI 027830, JCM 9332, NCTC 584, NRRL 895, P. lilacinum, Paecilomyces lilacinum, Paecilomyces lilacinus, Penicillium lilacinum, Purpureocillium lilacinum (Thom) Luangsa-ard, Houbraken, Hywel-Jones & Samson 2011, QM 7592, VKM F-3193
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