STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VFPBJ_03349E3 ubiquitin protein ligase. (705 aa)    
Predicted Functional Partners:
VFPFJ_01003
Ubiquitin-conjugating enzyme E2 2; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.997
PCL_11208
Histone H2B; Belongs to the histone H2B family.
    
 0.889
VFPFJ_06310
RNA polymerase II-associated protein.
   
 0.844
VFPBJ_03403
RNA polymerase II-associated, Paf1.
    
 0.828
VFPFJ_05470
RNA polymerase-associated protein CTR9.
   
 0.810
VFPFJ_05039
Leo1-like protein.
   
 0.808
VFPBJ_01287
SET and WW domain-containingprotein; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. SET2 subfamily.
   
 
 0.795
VFPFJ_05295
Formin binding protein (FNB3).
   
 0.742
VFPFJ_02674
Beta-lactamase-type transpeptidase fold domain-containing protein.
    
 0.732
VFPFJ_09379
RNA polymerase II transcription elongation factor Rtf1p.
   
 0.690
Your Current Organism:
Purpureocillium lilacinum
NCBI taxonomy Id: 33203
Other names: ATCC 10114, CBS 284.36, CCRC 31616, CCRC:31616, DSM 846, IMI 027830, JCM 9332, NCTC 584, NRRL 895, P. lilacinum, Paecilomyces lilacinum, Paecilomyces lilacinus, Penicillium lilacinum, Purpureocillium lilacinum (Thom) Luangsa-ard, Houbraken, Hywel-Jones & Samson 2011, QM 7592, VKM F-3193
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