Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
PCL_04305 | PCL_04306 | A0A179HA29 | A0A179HA31 | Nucleolar complex-associated protein 3; Required for synthesis of 60S ribosomal subunits and the transport of pre-ribosomes from the nucleoplasm to the cytoplasm. Belongs to the CBF/MAK21 family. | Brix domain-containing protein. | 0.906 |
PCL_04305 | PCL_07312 | A0A179HA29 | A0A179GUS7 | Nucleolar complex-associated protein 3; Required for synthesis of 60S ribosomal subunits and the transport of pre-ribosomes from the nucleoplasm to the cytoplasm. Belongs to the CBF/MAK21 family. | GTP-binding protein. | 0.992 |
PCL_04305 | PCL_09974 | A0A179HA29 | A0A179GL40 | Nucleolar complex-associated protein 3; Required for synthesis of 60S ribosomal subunits and the transport of pre-ribosomes from the nucleoplasm to the cytoplasm. Belongs to the CBF/MAK21 family. | Ribosomal protein L24e. | 0.930 |
PCL_04305 | PCL_12726 | A0A179HA29 | A0A179HXU8 | Nucleolar complex-associated protein 3; Required for synthesis of 60S ribosomal subunits and the transport of pre-ribosomes from the nucleoplasm to the cytoplasm. Belongs to the CBF/MAK21 family. | Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily. | 0.992 |
PCL_04305 | SPB1 | A0A179HA29 | A0A179H706 | Nucleolar complex-associated protein 3; Required for synthesis of 60S ribosomal subunits and the transport of pre-ribosomes from the nucleoplasm to the cytoplasm. Belongs to the CBF/MAK21 family. | AdoMet-dependent rRNA methyltransferase SPB1; Required for proper assembly of pre-ribosomal particles during the biogenesis of the 60S ribosomal subunit; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily. | 0.978 |
PCL_04305 | VFPFJ_03785 | A0A179HA29 | A0A179HNP0 | Nucleolar complex-associated protein 3; Required for synthesis of 60S ribosomal subunits and the transport of pre-ribosomes from the nucleoplasm to the cytoplasm. Belongs to the CBF/MAK21 family. | RNA recognition motif domain-containingprotein. | 0.988 |
PCL_04305 | VFPFJ_07716 | A0A179HA29 | A0A179H594 | Nucleolar complex-associated protein 3; Required for synthesis of 60S ribosomal subunits and the transport of pre-ribosomes from the nucleoplasm to the cytoplasm. Belongs to the CBF/MAK21 family. | rRNA processing protein. | 0.959 |
PCL_04305 | VFPFJ_08218 | A0A179HA29 | A0A179H8U7 | Nucleolar complex-associated protein 3; Required for synthesis of 60S ribosomal subunits and the transport of pre-ribosomes from the nucleoplasm to the cytoplasm. Belongs to the CBF/MAK21 family. | Protein MAK16; Belongs to the MAK16 family. | 0.985 |
PCL_04305 | VFPFJ_11128 | A0A179HA29 | A0A179FR87 | Nucleolar complex-associated protein 3; Required for synthesis of 60S ribosomal subunits and the transport of pre-ribosomes from the nucleoplasm to the cytoplasm. Belongs to the CBF/MAK21 family. | Nucleolar, Nop52. | 0.955 |
PCL_04305 | YTM1 | A0A179HA29 | A0A179H726 | Nucleolar complex-associated protein 3; Required for synthesis of 60S ribosomal subunits and the transport of pre-ribosomes from the nucleoplasm to the cytoplasm. Belongs to the CBF/MAK21 family. | Ribosome biogenesis protein YTM1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome. | 0.980 |
PCL_04306 | PCL_04305 | A0A179HA31 | A0A179HA29 | Brix domain-containing protein. | Nucleolar complex-associated protein 3; Required for synthesis of 60S ribosomal subunits and the transport of pre-ribosomes from the nucleoplasm to the cytoplasm. Belongs to the CBF/MAK21 family. | 0.906 |
PCL_04306 | PCL_07312 | A0A179HA31 | A0A179GUS7 | Brix domain-containing protein. | GTP-binding protein. | 0.981 |
PCL_04306 | PCL_09974 | A0A179HA31 | A0A179GL40 | Brix domain-containing protein. | Ribosomal protein L24e. | 0.969 |
PCL_04306 | PCL_12726 | A0A179HA31 | A0A179HXU8 | Brix domain-containing protein. | Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily. | 0.973 |
PCL_04306 | SPB1 | A0A179HA31 | A0A179H706 | Brix domain-containing protein. | AdoMet-dependent rRNA methyltransferase SPB1; Required for proper assembly of pre-ribosomal particles during the biogenesis of the 60S ribosomal subunit; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily. | 0.943 |
PCL_04306 | VFPFJ_03785 | A0A179HA31 | A0A179HNP0 | Brix domain-containing protein. | RNA recognition motif domain-containingprotein. | 0.996 |
PCL_04306 | VFPFJ_07716 | A0A179HA31 | A0A179H594 | Brix domain-containing protein. | rRNA processing protein. | 0.989 |
PCL_04306 | VFPFJ_08218 | A0A179HA31 | A0A179H8U7 | Brix domain-containing protein. | Protein MAK16; Belongs to the MAK16 family. | 0.997 |
PCL_04306 | VFPFJ_11128 | A0A179HA31 | A0A179FR87 | Brix domain-containing protein. | Nucleolar, Nop52. | 0.988 |
PCL_04306 | YTM1 | A0A179HA31 | A0A179H726 | Brix domain-containing protein. | Ribosome biogenesis protein YTM1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome. | 0.978 |
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