STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ODR86378.1Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (199 aa)    
Predicted Functional Partners:
ODR86379.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.996
ODR87951.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.984
ODR85845.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.963
ODR84718.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.960
ODR84412.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.930
ODR85738.1
Tetrathionate response regulatory protein TtrR; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 
0.925
ODR84499.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.909
ODR87957.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.894
ODR84128.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.752
ODR84347.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.722
Your Current Organism:
Shewanella xiamenensis
NCBI taxonomy Id: 332186
Other names: CCTCC M 209017, JCM 16212, S. xiamenensis, Shewanella sp. S4, Shewanella xiamenensis Huang et al. 2010, strain S4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.