STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KJV30671.1Derived by automated computational analysis using gene prediction method: Protein Homology. (102 aa)    
Predicted Functional Partners:
KJV30672.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.924
KJV30673.1
Protein nirF; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.899
KJV30674.1
AsnC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.831
KJV30675.1
AsnC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.831
msrP
Sulfoxide reductase catalytic subunit YedY; Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to re [...]
   
 
 0.671
KJV30677.1
Cytochrome Cbb3; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.660
KJV30676.1
Radical SAM protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.637
KJV30670.1
Nitrite reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.603
KJV26514.1
Rieske (2Fe-2S) protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.545
KJV30665.1
Nitric oxide reductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the heme-copper respiratory oxidase family.
  
  
 0.531
Your Current Organism:
Aquitalea magnusonii
NCBI taxonomy Id: 332411
Other names: A. magnusonii, Aquitalea magnusonii Lau et al. 2006, DSM 25134, LMG 23054, LMG:23054, NBRC 103050, beta proteobacterium TRO-001DR8, strain TRO-001DR8
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