STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDM27370.1Cytochrome c biogenesis protein. (514 aa)    
Predicted Functional Partners:
SDM27344.1
Cytochrome c-type biogenesis protein CcsB.
 
  
 0.993
SDM27398.1
Cytochrome c-type biogenesis protein.
 
  
 0.978
SDM27422.1
TPR repeat-containing protein.
 
     0.925
SDM27319.1
Peroxiredoxin.
 
  
 0.872
SDM27451.1
Nitrite reductase (cytochrome c-552).
 
  
 0.818
SDM27469.1
Cytochrome c nitrite reductase small subunit.
 
  
 0.801
SDM26362.1
Hypothetical protein.
  
     0.527
SDN00681.1
Uncharacterized conserved protein YbjT, contains NAD(P)-binding and DUF2867 domains.
  
     0.520
SDM30546.1
Uroporphyrinogen decarboxylase; Belongs to the uroporphyrinogen decarboxylase family.
 
  
 0.483
SDM26336.1
AAA domain-containing protein.
  
     0.469
Your Current Organism:
Actinomyces ruminicola
NCBI taxonomy Id: 332524
Other names: A. ruminicola, Actinomyces ruminicola An et al. 2006 emend. Nouioui et al. 2018, CGMCC 1.5030, DSM 27982, JCM 13352, strain B71
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