STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDM31328.1VTC domain-containing protein. (281 aa)    
Predicted Functional Partners:
SDM31303.1
Protein of unknown function.
 
     0.923
SDM31350.1
Protein of unknown function.
 
     0.905
SDM25406.1
Exopolysaccharide biosynthesis protein.
 
     0.626
SDM73797.1
ABC-2 type transport system permease protein.
  
     0.500
SDM80947.1
Transcriptional regulator, AbiEi antitoxin, Type IV TA system.
  
     0.494
SDM80672.1
Uncharacterized conserved protein.
  
     0.410
SDM53134.1
Transcriptional regulator, AbiEi antitoxin, Type IV TA system.
  
     0.409
SDM25433.1
Glycosyltransferase involved in cell wall bisynthesis.
 
     0.402
Your Current Organism:
Actinomyces ruminicola
NCBI taxonomy Id: 332524
Other names: A. ruminicola, Actinomyces ruminicola An et al. 2006 emend. Nouioui et al. 2018, CGMCC 1.5030, DSM 27982, JCM 13352, strain B71
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.