STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDM52078.1Sugar transferase involved in LPS biosynthesis (colanic, teichoic acid). (222 aa)    
Predicted Functional Partners:
SDM51643.1
Capsular exopolysaccharide family.
 
 
 0.852
SDM52126.1
Glycosyltransferase involved in cell wall bisynthesis.
 
    0.766
SDM52108.1
Biotin carboxylase.
 
    0.680
SDN07698.1
dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose.
  
  
 0.658
SDM51786.1
Glycosyltransferase involved in cell wall bisynthesis.
  
 0.622
SDM52157.1
Oligosaccharide repeat unit polymerase.
  
    0.609
SDM36216.1
Hypothetical protein.
  
 
 0.568
SDM36247.1
Hypothetical protein.
  
 
 0.568
SDN11991.1
Mannose-1-phosphate guanylyltransferase.
  
 
 0.562
SDM92438.1
Capsular polysaccharide biosynthesis protein.
 
 
 0.555
Your Current Organism:
Actinomyces ruminicola
NCBI taxonomy Id: 332524
Other names: A. ruminicola, Actinomyces ruminicola An et al. 2006 emend. Nouioui et al. 2018, CGMCC 1.5030, DSM 27982, JCM 13352, strain B71
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