STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDM66508.1Hypothetical protein. (259 aa)    
Predicted Functional Partners:
SDM66539.1
alpha-L-rhamnosidase.
       0.464
SDM66480.1
Transcriptional regulator, TetR family.
 
     0.455
SDM62480.1
L-ribulose-5-phosphate 4-epimerase.
    
  0.442
SDM66371.1
Rhamnulose-1-phosphate aldolase.
    
  0.442
SDN05214.1
L-ribulose-5-phosphate 4-epimerase.
    
  0.442
SDN08618.1
L-ribulose-5-phosphate 4-epimerase.
    
  0.442
SDN22426.1
L-ribulose-5-phosphate 4-epimerase.
    
  0.442
SDN27452.1
L-fuculose-phosphate aldolase.
    
  0.442
SDM68274.1
Helix-turn-helix domain-containing protein.
  
     0.408
SDM74391.1
Regulator of protease activity HflC, stomatin/prohibitin superfamily.
    
  0.401
Your Current Organism:
Actinomyces ruminicola
NCBI taxonomy Id: 332524
Other names: A. ruminicola, Actinomyces ruminicola An et al. 2006 emend. Nouioui et al. 2018, CGMCC 1.5030, DSM 27982, JCM 13352, strain B71
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.