Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDM51294.1 | SDM82269.1 | SAMN04487766_103144 | SAMN04487766_10785 | Hypothetical protein; Belongs to the UPF0109 family. | Ribonuclease E. | 0.779 |
SDM51294.1 | SDN30311.1 | SAMN04487766_103144 | SAMN04487766_1238 | Hypothetical protein; Belongs to the UPF0109 family. | spoIIIJ-associated protein. | 0.967 |
SDM51294.1 | rplU | SAMN04487766_103144 | SAMN04487766_10784 | Hypothetical protein; Belongs to the UPF0109 family. | Large subunit ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.576 |
SDM59167.1 | SDM82269.1 | SAMN04487766_10499 | SAMN04487766_10785 | UPF0042 nucleotide-binding protein; Displays ATPase and GTPase activities. | Ribonuclease E. | 0.836 |
SDM82269.1 | SDM51294.1 | SAMN04487766_10785 | SAMN04487766_103144 | Ribonuclease E. | Hypothetical protein; Belongs to the UPF0109 family. | 0.779 |
SDM82269.1 | SDM59167.1 | SAMN04487766_10785 | SAMN04487766_10499 | Ribonuclease E. | UPF0042 nucleotide-binding protein; Displays ATPase and GTPase activities. | 0.836 |
SDM82269.1 | SDM93499.1 | SAMN04487766_10785 | SAMN04487766_10950 | Ribonuclease E. | PhoH-like ATPase. | 0.602 |
SDM82269.1 | SDN04409.1 | SAMN04487766_10785 | SAMN04487766_11174 | Ribonuclease E. | ATP-dependent RNA helicase DeaD; Belongs to the DEAD box helicase family. | 0.848 |
SDM82269.1 | SDN12689.1 | SAMN04487766_10785 | SAMN04487766_11444 | Ribonuclease E. | Superfamily II DNA and RNA helicase; Belongs to the DEAD box helicase family. | 0.848 |
SDM82269.1 | SDN30311.1 | SAMN04487766_10785 | SAMN04487766_1238 | Ribonuclease E. | spoIIIJ-associated protein. | 0.796 |
SDM82269.1 | eno | SAMN04487766_10785 | SAMN04487766_10921 | Ribonuclease E. | Enolase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family. | 0.883 |
SDM82269.1 | pnp | SAMN04487766_10785 | SAMN04487766_10397 | Ribonuclease E. | Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | 0.976 |
SDM82269.1 | rnj | SAMN04487766_10785 | SAMN04487766_103204 | Ribonuclease E. | Ribonuclease J; An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay. | 0.595 |
SDM82269.1 | rplU | SAMN04487766_10785 | SAMN04487766_10784 | Ribonuclease E. | Large subunit ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.617 |
SDM93499.1 | SDM82269.1 | SAMN04487766_10950 | SAMN04487766_10785 | PhoH-like ATPase. | Ribonuclease E. | 0.602 |
SDN04409.1 | SDM82269.1 | SAMN04487766_11174 | SAMN04487766_10785 | ATP-dependent RNA helicase DeaD; Belongs to the DEAD box helicase family. | Ribonuclease E. | 0.848 |
SDN04409.1 | SDN30311.1 | SAMN04487766_11174 | SAMN04487766_1238 | ATP-dependent RNA helicase DeaD; Belongs to the DEAD box helicase family. | spoIIIJ-associated protein. | 0.405 |
SDN04409.1 | eno | SAMN04487766_11174 | SAMN04487766_10921 | ATP-dependent RNA helicase DeaD; Belongs to the DEAD box helicase family. | Enolase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family. | 0.648 |
SDN04409.1 | pnp | SAMN04487766_11174 | SAMN04487766_10397 | ATP-dependent RNA helicase DeaD; Belongs to the DEAD box helicase family. | Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | 0.943 |
SDN04409.1 | rplU | SAMN04487766_11174 | SAMN04487766_10784 | ATP-dependent RNA helicase DeaD; Belongs to the DEAD box helicase family. | Large subunit ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.797 |
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