STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDN15471.12,5-diketo-D-gluconate reductase A. (287 aa)    
Predicted Functional Partners:
SDM41660.1
Malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase.
   
 0.798
SDM66036.1
Flavodoxin.
     0.679
SDM98531.1
Lactoylglutathione lyase.
   
 0.513
crgA
Uncharacterised protein family (UPF0233); Involved in cell division; Belongs to the CrgA family.
       0.480
SDN15496.1
Hypothetical protein.
       0.470
SDN15400.1
Hypothetical protein.
       0.466
SDN15429.1
Sortase A.
       0.466
SDM40881.1
Predicted oxidoreductase.
 
 
0.461
SDM41403.1
S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase.
   
 0.449
SDM50045.1
Lactaldehyde reductase.
   
 0.449
Your Current Organism:
Actinomyces ruminicola
NCBI taxonomy Id: 332524
Other names: A. ruminicola, Actinomyces ruminicola An et al. 2006 emend. Nouioui et al. 2018, CGMCC 1.5030, DSM 27982, JCM 13352, strain B71
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