STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFLA_069720DEAD/DEAH box RNA helicase. (1201 aa)    
Predicted Functional Partners:
AFLA_103030
Pre-mRNA splicing factor, putative.
   
 0.996
AFLA_027900
Splicing factor 3a subunit 2, putative.
    
 0.995
AFLA_137290
Splicing factor 3B subunit 1, putative.
   
 0.995
AFLA_004610
ATP dependent DNA ligase domain protein.
   
 0.995
AFLA_002520
Uncharacterized protein.
    
 0.995
AFLA_132080
Small nuclear ribonucleoprotein U2, A.
    
 0.993
AFLA_051060
Splicing factor subunit; Belongs to the SF3B5 family.
    
 0.993
AFLA_033530
Nuclear mRNA splicing factor, putative.
    
 0.992
AFLA_035010
Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.
    
 0.991
AFLA_031810
Zinc knuckle splicing factor Zfm1.
   
 0.983
Your Current Organism:
Aspergillus flavus
NCBI taxonomy Id: 332952
Other names: A. flavus NRRL3357, Aspergillus flavus NRRL3357
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