STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEK18599.1Gliding motility-associated lipoprotein GldJ. (525 aa)    
Predicted Functional Partners:
SEL42490.1
Protein involved in gliding motility GldD.
  
   
 0.815
SEK18785.1
Gliding motility-associated lipoprotein GldB.
  
   
 0.813
SEL74874.1
Gliding motility associated protien GldN.
 
   
 0.812
SEK57338.1
Protein involved in gliding motility GldG.
  
   
 0.797
SEL67489.1
Cell surface protein SprA.
  
   
 0.796
SEK18223.1
Hypothetical protein.
  
   
 0.784
SEK74429.1
Probable protein-translocating porin PorT.
  
   
 0.782
SEL74844.1
Gliding motility-associated protein GldM.
 
   
 0.779
SEL74826.1
Gliding motility-associated protein GldL.
 
   
 0.772
SEL15747.1
WD40-like Beta Propeller Repeat.
 
    0.769
Your Current Organism:
Parapedobacter koreensis
NCBI taxonomy Id: 332977
Other names: KCTC 12643, LMG 23493, LMG:23493, P. koreensis, Parapedobacter koreensis Kim et al. 2007, Pedobacter sp. WPCB189, strain Jip14
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