STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEK23413.1Hypothetical protein. (431 aa)    
Predicted Functional Partners:
SEK23479.1
Bacteroides conjugative transposon TraM protein.
 
     0.938
SEK23571.1
Bacteroides conjugative transposon TraJ protein.
 
     0.900
SEK23664.1
Hypothetical protein.
 
     0.895
SEK23628.1
Hypothetical protein.
 
     0.894
SEK23609.1
Hypothetical protein.
 
     0.893
SEK23542.1
Bacteroides conjugative transposon TraK protein.
 
     0.892
SEK23445.1
Bacteroides conjugative transposon TraN protein.
 
     0.858
SEK23756.1
Protein of unknown function.
 
     0.832
SEK23710.1
Bacteroides conjugation system ATPase, TraG family.
 
     0.818
SEK23833.1
Protein of unknown function.
 
     0.788
Your Current Organism:
Parapedobacter koreensis
NCBI taxonomy Id: 332977
Other names: KCTC 12643, LMG 23493, LMG:23493, P. koreensis, Parapedobacter koreensis Kim et al. 2007, Pedobacter sp. WPCB189, strain Jip14
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.