STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEK27533.1RNA polymerase sigma-70 factor, ECF subfamily. (193 aa)    
Predicted Functional Partners:
SEK27496.1
FecR family protein.
 
   0.803
SEK27667.1
FecR family protein.
 
   0.737
SEK27765.1
FecR family protein.
 
   0.726
SEK26802.1
FecR family protein.
 
   0.713
SEK27243.1
FecR family protein.
 
   0.709
SEK27073.1
FecR family protein.
 
   0.696
SEK26484.1
FecR family protein.
 
   0.691
SEK17887.1
FecR family protein.
  
   0.679
SEL74127.1
FecR family protein.
  
   0.678
SEL43513.1
FecR family protein.
  
   0.676
Your Current Organism:
Parapedobacter koreensis
NCBI taxonomy Id: 332977
Other names: KCTC 12643, LMG 23493, LMG:23493, P. koreensis, Parapedobacter koreensis Kim et al. 2007, Pedobacter sp. WPCB189, strain Jip14
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