STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEK30720.1RNA polymerase sigma-70 factor, ECF subfamily. (195 aa)    
Predicted Functional Partners:
SEK35127.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.769
SEL27515.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.769
SEL34268.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.766
SEK18331.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.763
SEK98976.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.752
SEK28765.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.714
SEL78852.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.704
SEL73930.1
RNA polymerase sigma-70 factor, Bacteroides expansion family 1; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.691
SEL28200.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.683
SEK26518.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.649
Your Current Organism:
Parapedobacter koreensis
NCBI taxonomy Id: 332977
Other names: KCTC 12643, LMG 23493, LMG:23493, P. koreensis, Parapedobacter koreensis Kim et al. 2007, Pedobacter sp. WPCB189, strain Jip14
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.