STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEK31086.1Glycosyl hydrolases family 43; Belongs to the glycosyl hydrolase 43 family. (367 aa)    
Predicted Functional Partners:
SEL61266.1
Glycosyl hydrolases family 2, TIM barrel domain; Belongs to the glycosyl hydrolase 2 family.
  
  
  0.639
SEK31111.1
dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose.
       0.572
SEL39003.1
Glucosylceramidase; Belongs to the glycosyl hydrolase 30 family.
  
 
 0.566
SEK31048.1
6-phosphogluconate dehydrogenase (decarboxylating); Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH.
     
 0.555
SEK31146.1
Acyl-CoA hydrolase.
       0.543
SEK30260.1
Lysophospholipase L1.
 
   
 0.501
SEK73733.1
Beta-galactosidase/beta-glucuronidase.
  
  
  0.499
SEK77259.1
Carbohydrate binding domain-containing protein.
  
  
 0.490
SEL81549.1
alpha-L-fucosidase 2.
  
     0.486
SEL72972.1
alpha-L-fucosidase 2.
  
     0.483
Your Current Organism:
Parapedobacter koreensis
NCBI taxonomy Id: 332977
Other names: KCTC 12643, LMG 23493, LMG:23493, P. koreensis, Parapedobacter koreensis Kim et al. 2007, Pedobacter sp. WPCB189, strain Jip14
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