STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEK31596.1Thioredoxin reductase. (314 aa)    
Predicted Functional Partners:
SEK72465.1
Glutamate synthase (NADH) large subunit.
    
 0.862
SEL11571.1
Ferredoxin, 2Fe-2S.
   
 
 0.841
SEK31569.1
Transcriptional regulator, TetR family.
 
     0.792
SEK34872.1
1-Cys peroxiredoxin.
  
 
 0.777
SEL80673.1
Peroxiredoxin (alkyl hydroperoxide reductase subunit C).
  
 
 0.777
SEK20974.1
Thioredoxin 1.
   
 0.763
SEL06749.1
Thioredoxin.
   
 0.763
SEL34769.1
Thioredoxin; Belongs to the thioredoxin family.
   
 0.763
SEL80696.1
Thiol-disulfide isomerase or thioredoxin.
   
 0.763
gcvP
Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
     
 0.761
Your Current Organism:
Parapedobacter koreensis
NCBI taxonomy Id: 332977
Other names: KCTC 12643, LMG 23493, LMG:23493, P. koreensis, Parapedobacter koreensis Kim et al. 2007, Pedobacter sp. WPCB189, strain Jip14
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