STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEK35661.1Hypothetical protein. (682 aa)    
Predicted Functional Partners:
SEK37076.1
Carbohydrate binding module (family 6); Belongs to the glycosyl hydrolase 5 (cellulase A) family.
   
 0.972
SEK62251.1
Hypothetical protein.
   
 0.972
SEK17929.1
Putative collagen-binding domain of a collagenase.
   
  0.961
SEL13821.1
Putative collagen-binding domain of a collagenase.
   
  0.961
SEK35695.1
Phosphohistidine phosphatase, SixA.
       0.782
SEK35622.1
FKBP-type peptidyl prolyl cis-trans isomerase.
       0.762
SEK77259.1
Carbohydrate binding domain-containing protein.
    
   0.716
SEK77566.1
Endo-1,4-beta-xylanase.
    
   0.716
SEK62491.1
Uncharacterized protein involved in exopolysaccharide biosynthesis.
    
 0.606
SEL25642.1
Capsular exopolysaccharide family.
    
 0.606
Your Current Organism:
Parapedobacter koreensis
NCBI taxonomy Id: 332977
Other names: KCTC 12643, LMG 23493, LMG:23493, P. koreensis, Parapedobacter koreensis Kim et al. 2007, Pedobacter sp. WPCB189, strain Jip14
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.