STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEK40984.1Concanavalin A-like lectin/glucanases superfamily protein. (276 aa)    
Predicted Functional Partners:
SEK40872.1
F5/8 type C domain-containing protein; Belongs to the glycosyl hydrolase 43 family.
 
     0.890
SEK41013.1
Starch-binding associating with outer membrane.
 
     0.886
SEK41052.1
TonB-linked outer membrane protein, SusC/RagA family.
 
     0.884
SEK40944.1
Hypothetical protein.
 
     0.866
SEK40915.1
Hypothetical protein.
 
     0.778
SEK40842.1
Beta-glucosidase; Belongs to the glycosyl hydrolase 3 family.
 
     0.674
SEK39180.1
Xylose isomerase-like TIM barrel.
  
     0.612
SEL79717.1
Hypothetical protein.
  
     0.560
SEL63389.1
Hypothetical protein.
  
     0.559
SEK30688.1
2'-5' RNA ligase.
  
     0.550
Your Current Organism:
Parapedobacter koreensis
NCBI taxonomy Id: 332977
Other names: KCTC 12643, LMG 23493, LMG:23493, P. koreensis, Parapedobacter koreensis Kim et al. 2007, Pedobacter sp. WPCB189, strain Jip14
Server load: low (20%) [HD]