STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEK60505.1Alkaline phosphatase; Belongs to the alkaline phosphatase family. (469 aa)    
Predicted Functional Partners:
secA
Protein translocase subunit secA; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane; Belongs to the SecA family.
    
 
 0.916
SEK98730.1
Trigger factor.
    
 
 0.899
folE
GTP cyclohydrolase I.
    
  0.871
SEL40125.1
Alkaline phosphatase; Belongs to the alkaline phosphatase family.
  
  
 
0.811
SEK28334.1
Calcineurin-like phosphoesterase.
 
 
 0.795
SEK26974.1
3',5'-cyclic AMP phosphodiesterase CpdA.
 
 
 0.778
SEK60466.1
phosphoribosyl-AMP cyclohydrolase; Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP; Belongs to the PRA-CH family.
       0.773
SEK60277.1
6-pyruvoyltetrahydropterin/6- carboxytetrahydropterin synthase.
    
  0.761
SEL74606.1
Thiamine-phosphate pyrophosphorylase.
    
  0.754
SEK60396.1
Fur family transcriptional regulator, ferric uptake regulator; Belongs to the Fur family.
       0.708
Your Current Organism:
Parapedobacter koreensis
NCBI taxonomy Id: 332977
Other names: KCTC 12643, LMG 23493, LMG:23493, P. koreensis, Parapedobacter koreensis Kim et al. 2007, Pedobacter sp. WPCB189, strain Jip14
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.