STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEK62425.1Hypothetical protein. (33 aa)    
Predicted Functional Partners:
SEK62459.1
O-antigen ligase.
       0.741
SEK62491.1
Uncharacterized protein involved in exopolysaccharide biosynthesis.
       0.741
SEK62535.1
Outer membrane efflux protein.
       0.644
SEK62395.1
Acetyltransferase (isoleucine patch superfamily).
       0.596
SEK62362.1
Glycosyltransferase involved in cell wall bisynthesis.
       0.536
SEK62334.1
Glycosyltransferase involved in cell wall bisynthesis.
       0.535
SEK62288.1
Glycosyltransferase, catalytic subunit of cellulose synthase and poly-beta-1,6-N-acetylglucosamine synthase.
       0.483
SEK62251.1
Hypothetical protein.
       0.435
SEK62574.1
Sugar transferase involved in LPS biosynthesis (colanic, teichoic acid).
       0.402
Your Current Organism:
Parapedobacter koreensis
NCBI taxonomy Id: 332977
Other names: KCTC 12643, LMG 23493, LMG:23493, P. koreensis, Parapedobacter koreensis Kim et al. 2007, Pedobacter sp. WPCB189, strain Jip14
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.