STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEK56122.1Lactate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. (325 aa)    
Predicted Functional Partners:
SEL04716.1
Hydroxypyruvate isomerase.
   
 
  0.838
SEL92809.1
Hydroxypyruvate isomerase; Belongs to the hyi family.
   
 
  0.838
SEL67542.1
Allosteric NADP-dependent malic enzyme.
   
 0.773
SEL50844.1
D-3-phosphoglycerate dehydrogenase.
   
 0.710
SEL96905.1
Glycerate kinase; Belongs to the glycerate kinase type-1 family.
 
  
  0.707
SEL97242.1
Glycerate kinase; Belongs to the glycerate kinase type-1 family.
 
  
  0.707
SEL66893.1
FAD/FMN-containing dehydrogenase.
   
 0.671
SEL84024.1
Pyruvate/2-oxoglutarate/acetoin dehydrogenase complex, dehydrogenase (E1) component.
  
 
 0.610
SEK98562.1
Competence/damage-inducible protein cinA; Belongs to the CinA family.
  
    0.564
SEK56079.1
Orotidine-5'-phosphate decarboxylase.
       0.551
Your Current Organism:
Parapedobacter koreensis
NCBI taxonomy Id: 332977
Other names: KCTC 12643, LMG 23493, LMG:23493, P. koreensis, Parapedobacter koreensis Kim et al. 2007, Pedobacter sp. WPCB189, strain Jip14
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.