STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEL09558.1Histidine kinase. (374 aa)    
Predicted Functional Partners:
SEL09528.1
DNA-binding response regulator, LytR/AlgR family.
 
   0.932
SEK99626.1
Histidine kinase.
  
     0.765
SEK40226.1
Two component transcriptional regulator, LytTR family.
  
   0.761
SEL24088.1
Hypothetical protein.
  
     0.761
SEL58586.1
Two component transcriptional regulator, LytTR family.
  
   0.761
SEL93444.1
Two component transcriptional regulator, LytTR family.
  
   0.759
SEK30763.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
  
     0.752
SEL51365.1
Histidine kinase.
  
     0.748
SEK77955.1
Histidine kinase.
  
     0.747
SEK53636.1
Histidine kinase.
  
     0.746
Your Current Organism:
Parapedobacter koreensis
NCBI taxonomy Id: 332977
Other names: KCTC 12643, LMG 23493, LMG:23493, P. koreensis, Parapedobacter koreensis Kim et al. 2007, Pedobacter sp. WPCB189, strain Jip14
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.