STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEL11039.1cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases. (194 aa)    
Predicted Functional Partners:
SEK72465.1
Glutamate synthase (NADH) large subunit.
    
 0.815
SEL52749.1
cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases.
  
  
  0.734
SEL52282.1
PAS domain S-box-containing protein.
   
 0.727
SEK40570.1
Signal transduction histidine kinase.
   
 0.694
SEL58055.1
HPt (histidine-containing phosphotransfer) domain-containing protein.
   
 0.661
SEK70328.1
Two-component system, chemotaxis family, sensor kinase CheA.
   
 0.660
SEK22151.1
Hypothetical protein.
    
  0.647
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.554
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.548
SEL74395.1
Hypothetical protein.
  
     0.543
Your Current Organism:
Parapedobacter koreensis
NCBI taxonomy Id: 332977
Other names: KCTC 12643, LMG 23493, LMG:23493, P. koreensis, Parapedobacter koreensis Kim et al. 2007, Pedobacter sp. WPCB189, strain Jip14
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.