STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEL26991.1Surface antigen. (782 aa)    
Predicted Functional Partners:
SEL42605.1
Beta-barrel assembly machine subunit BamD.
  
 
 0.972
SEK95247.1
Hypothetical protein.
   
 
 0.823
SEL93162.1
PQQ-like domain-containing protein.
   
 
 0.823
SEK71661.1
OstA-like protein.
  
  
 0.790
SEL32800.1
Autotransporter translocation and assembly factor TamB.
 
   
 0.787
SEK76370.1
Periplasmic chaperone for outer membrane proteins Skp.
  
  
 0.782
SEL79532.1
Putative porin.
  
     0.772
SEL42961.1
Ig-like domain-containing protein.
  
     0.765
SEL12200.1
Hypothetical protein.
  
     0.760
SEK98593.1
LPS assembly outer membrane protein LptD (organic solvent tolerance protein OstA).
  
  
 0.759
Your Current Organism:
Parapedobacter koreensis
NCBI taxonomy Id: 332977
Other names: KCTC 12643, LMG 23493, LMG:23493, P. koreensis, Parapedobacter koreensis Kim et al. 2007, Pedobacter sp. WPCB189, strain Jip14
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.