STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEL30828.1Helix-turn-helix domain-containing protein. (131 aa)    
Predicted Functional Partners:
SEL30886.1
Hypothetical protein.
 
     0.643
SEK98562.1
Competence/damage-inducible protein cinA; Belongs to the CinA family.
    
 0.617
SEK25582.1
HEPN domain-containing protein.
  
     0.533
SEL93632.1
TonB-linked outer membrane protein, SusC/RagA family.
  
     0.521
SEL70298.1
SusD family protein.
  
     0.509
SEL30860.1
Hypothetical protein.
       0.501
SEL41505.1
SusD family protein.
  
     0.500
SEK96590.1
Uncharacterized damage-inducible protein DinB (forms a four-helix bundle).
  
     0.495
SEL41486.1
TonB-linked outer membrane protein, SusC/RagA family.
  
     0.495
SEL70283.1
TonB-linked outer membrane protein, SusC/RagA family.
  
     0.495
Your Current Organism:
Parapedobacter koreensis
NCBI taxonomy Id: 332977
Other names: KCTC 12643, LMG 23493, LMG:23493, P. koreensis, Parapedobacter koreensis Kim et al. 2007, Pedobacter sp. WPCB189, strain Jip14
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.