STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEL42219.1ABC-2 type transport system ATP-binding protein. (231 aa)    
Predicted Functional Partners:
SEL42174.1
ABC-2 type transport system permease protein.
 
  0.970
SEL42147.1
Protein of unknown function.
 
  0.969
SEL90985.1
ABC-2 type transport system permease protein.
 
 
 
  0.927
SEL42192.1
Iron complex outermembrane recepter protein.
 
     0.767
SEL90961.1
ABC-2 type transport system permease protein.
 
 
 
  0.731
SEL16762.1
ABC-2 type transport system permease protein.
  
 0.708
SEK57338.1
Protein involved in gliding motility GldG.
  
 0.691
atpD
ATP synthase F1 subcomplex beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.
    
 
 0.681
atpA
ATP synthase F1 subcomplex alpha subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit.
    
   0.676
SEK20450.1
ATP synthase F1 subcomplex epsilon subunit.
    
   0.627
Your Current Organism:
Parapedobacter koreensis
NCBI taxonomy Id: 332977
Other names: KCTC 12643, LMG 23493, LMG:23493, P. koreensis, Parapedobacter koreensis Kim et al. 2007, Pedobacter sp. WPCB189, strain Jip14
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.