STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEL53785.1Putative ABC transport system permease protein. (814 aa)    
Predicted Functional Partners:
SEL54189.1
Putative ABC transport system ATP-binding protein.
  
  0.859
SEL54671.1
HlyD family secretion protein.
  
   0.858
SEL45129.1
ABC-type lipoprotein export system, ATPase component.
  
  0.842
SEL79888.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
  
     0.762
SEL53805.1
FtsX-like permease family protein.
 
   
0.663
macB
Putative ABC transport system ATP-binding protein; Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
  
  0.554
SEL53820.1
Putative ABC transport system permease protein.
 
    
0.537
SEL51200.1
Outer membrane protein.
  
 
   0.527
SEL53766.1
Duplicated orphan permease.
 
    
0.515
lolD
Lipoprotein-releasing system ATP-binding protein; Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner. Belongs to the ABC transporter superfamily. Lipoprotein translocase (TC 3.A.1.125) family.
   
  0.481
Your Current Organism:
Parapedobacter koreensis
NCBI taxonomy Id: 332977
Other names: KCTC 12643, LMG 23493, LMG:23493, P. koreensis, Parapedobacter koreensis Kim et al. 2007, Pedobacter sp. WPCB189, strain Jip14
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.