STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEL54634.1Duplicated orphan permease. (787 aa)    
Predicted Functional Partners:
SEL54671.1
HlyD family secretion protein.
 
   0.911
SEL54189.1
Putative ABC transport system ATP-binding protein.
  
  0.864
SEL45129.1
ABC-type lipoprotein export system, ATPase component.
  
  0.849
SEL79888.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
  
     0.770
SEL51200.1
Outer membrane protein.
  
 
   0.621
SEL54653.1
ABC-type antimicrobial peptide transport system, permease component.
 
   
0.588
SEL54594.1
Predicted nuclease, contains PIN domain, potential toxin-antitoxin system component.
       0.576
SEL54616.1
Uncharacterized conserved protein, DUF433 family.
       0.576
macB
Putative ABC transport system ATP-binding protein; Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
  
  0.569
SEL79868.1
DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, and a Fis-type DNA-binding domains.
  
     0.527
Your Current Organism:
Parapedobacter koreensis
NCBI taxonomy Id: 332977
Other names: KCTC 12643, LMG 23493, LMG:23493, P. koreensis, Parapedobacter koreensis Kim et al. 2007, Pedobacter sp. WPCB189, strain Jip14
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.