STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEL49017.1Sugar phosphate isomerase/epimerase. (281 aa)    
Predicted Functional Partners:
SEL49149.1
Methane oxygenase PmoA.
 
    0.786
SEL49003.1
Fucose permease.
       0.773
SEL49045.1
TonB-linked outer membrane protein, SusC/RagA family.
       0.709
SEL49062.1
Starch-binding associating with outer membrane.
       0.656
SEL49102.1
Hypothetical protein.
       0.656
SEL49127.1
Copper binding protein, plastocyanin/azurin family.
       0.634
SEL48984.1
AraC family transcriptional regulator, L-rhamnose operon regulatory protein RhaS.
 
     0.632
SEK18976.1
Predicted dehydrogenase.
  
 
  0.609
SEL04636.1
Predicted dehydrogenase.
  
 
  0.549
SEK33831.1
Predicted dehydrogenase.
  
    0.440
Your Current Organism:
Parapedobacter koreensis
NCBI taxonomy Id: 332977
Other names: KCTC 12643, LMG 23493, LMG:23493, P. koreensis, Parapedobacter koreensis Kim et al. 2007, Pedobacter sp. WPCB189, strain Jip14
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.