Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SEL01893.1 | SEL23449.1 | SAMN05421740_103255 | SAMN05421740_1043 | Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase. | ThiF family protein. | 0.471 |
SEL01893.1 | SEL23477.1 | SAMN05421740_103255 | SAMN05421740_1044 | Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase. | Integrative and conjugative element protein, VC0181 family. | 0.471 |
SEL01893.1 | SEL74522.1 | SAMN05421740_103255 | SAMN05421740_109113 | Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase. | Adenylyltransferase and sulfurtransferase. | 0.629 |
SEL01893.1 | SEL74548.1 | SAMN05421740_103255 | SAMN05421740_109114 | Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase. | Tyrosine lyase ThiH. | 0.499 |
SEL01893.1 | SEL74606.1 | SAMN05421740_103255 | SAMN05421740_109117 | Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase. | Thiamine-phosphate pyrophosphorylase. | 0.984 |
SEL01893.1 | SEL74644.1 | SAMN05421740_103255 | SAMN05421740_109119 | Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase. | Sulfur carrier protein ThiS. | 0.879 |
SEL01893.1 | thiC | SAMN05421740_103255 | SAMN05421740_109118 | Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase. | Hydroxymethylpyrimidine synthase; Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction. Belongs to the ThiC family. | 0.990 |
SEL01893.1 | thiE-2 | SAMN05421740_103255 | SAMN05421740_109116 | Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase. | Thiamine-phosphate diphosphorylase; Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP). Belongs to the thiamine-phosphate synthase family. | 0.999 |
SEL01893.1 | thiG | SAMN05421740_103255 | SAMN05421740_109115 | Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase. | Thiazole-phosphate synthase; Catalyzes the rearrangement of 1-deoxy-D-xylulose 5-phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S. | 0.882 |
SEL23449.1 | SEL01893.1 | SAMN05421740_1043 | SAMN05421740_103255 | ThiF family protein. | Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase. | 0.471 |
SEL23449.1 | SEL23477.1 | SAMN05421740_1043 | SAMN05421740_1044 | ThiF family protein. | Integrative and conjugative element protein, VC0181 family. | 0.831 |
SEL23449.1 | SEL74606.1 | SAMN05421740_1043 | SAMN05421740_109117 | ThiF family protein. | Thiamine-phosphate pyrophosphorylase. | 0.881 |
SEL23449.1 | SEL74644.1 | SAMN05421740_1043 | SAMN05421740_109119 | ThiF family protein. | Sulfur carrier protein ThiS. | 0.977 |
SEL23449.1 | thiC | SAMN05421740_1043 | SAMN05421740_109118 | ThiF family protein. | Hydroxymethylpyrimidine synthase; Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction. Belongs to the ThiC family. | 0.639 |
SEL23449.1 | thiE-2 | SAMN05421740_1043 | SAMN05421740_109116 | ThiF family protein. | Thiamine-phosphate diphosphorylase; Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP). Belongs to the thiamine-phosphate synthase family. | 0.425 |
SEL23449.1 | thiG | SAMN05421740_1043 | SAMN05421740_109115 | ThiF family protein. | Thiazole-phosphate synthase; Catalyzes the rearrangement of 1-deoxy-D-xylulose 5-phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S. | 0.906 |
SEL23449.1 | tilS | SAMN05421740_1043 | SAMN05421740_102502 | ThiF family protein. | tRNA(Ile)-lysidine synthase; Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine. Belongs to the tRNA(Ile)-lysidine synthase family. | 0.449 |
SEL23477.1 | SEL01893.1 | SAMN05421740_1044 | SAMN05421740_103255 | Integrative and conjugative element protein, VC0181 family. | Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase. | 0.471 |
SEL23477.1 | SEL23449.1 | SAMN05421740_1044 | SAMN05421740_1043 | Integrative and conjugative element protein, VC0181 family. | ThiF family protein. | 0.831 |
SEL23477.1 | SEL74606.1 | SAMN05421740_1044 | SAMN05421740_109117 | Integrative and conjugative element protein, VC0181 family. | Thiamine-phosphate pyrophosphorylase. | 0.866 |
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