STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEL90935.1Putative hydrolase of the HAD superfamily. (245 aa)    
Predicted Functional Partners:
SEK21847.1
MobA-like NTP transferase domain-containing protein.
 
  
  0.863
SEK21787.1
CDP-alcohol phosphatidyltransferase.
 
  
  0.825
SEL03261.1
Diaminohydroxyphosphoribosylaminopyrimidine deaminase; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
    
 0.806
SEK21826.1
Hypothetical protein.
 
     0.798
SEK21755.1
Lysylphosphatidylglycerol synthase TM region.
 
     0.788
SEL34868.1
Riboflavin kinase / FMN adenylyltransferase; Belongs to the ribF family.
  
 
 0.756
SEL91228.1
Membrane protein involved in the export of O-antigen and teichoic acid.
 
     0.747
ribH
6,7-dimethyl-8-ribityllumazine synthase; Catalyzes the formation of 6,7-dimethyl-8-ribityllumazine by condensation of 5-amino-6-(D-ribitylamino)uracil with 3,4-dihydroxy-2- butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin.
     
 0.739
SEL07624.1
Riboflavin synthase alpha chain.
   
 
  0.738
SEK18503.1
Protein of unknown function.
  
     0.700
Your Current Organism:
Parapedobacter koreensis
NCBI taxonomy Id: 332977
Other names: KCTC 12643, LMG 23493, LMG:23493, P. koreensis, Parapedobacter koreensis Kim et al. 2007, Pedobacter sp. WPCB189, strain Jip14
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