Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SEK17758.1 | SEL14142.1 | SAMN05421740_10129 | SAMN05421740_103629 | Hypothetical protein. | Outer membrane protein beta-barrel domain-containing protein. | 0.410 |
SEK17758.1 | SEL91893.1 | SAMN05421740_10129 | SAMN05421740_11392 | Hypothetical protein. | Wobble nucleotide-excising tRNase. | 0.542 |
SEK24778.1 | SEL14142.1 | SAMN05421740_101335 | SAMN05421740_103629 | DNA-binding transcriptional regulator, AcrR family. | Outer membrane protein beta-barrel domain-containing protein. | 0.479 |
SEK24778.1 | SEL91893.1 | SAMN05421740_101335 | SAMN05421740_11392 | DNA-binding transcriptional regulator, AcrR family. | Wobble nucleotide-excising tRNase. | 0.432 |
SEK28152.1 | SEL91893.1 | SAMN05421740_101430 | SAMN05421740_11392 | TonB-dependent Receptor Plug Domain. | Wobble nucleotide-excising tRNase. | 0.442 |
SEK64967.1 | SEL14142.1 | SAMN05421740_102336 | SAMN05421740_103629 | Hypothetical protein. | Outer membrane protein beta-barrel domain-containing protein. | 0.425 |
SEK64967.1 | SEL91893.1 | SAMN05421740_102336 | SAMN05421740_11392 | Hypothetical protein. | Wobble nucleotide-excising tRNase. | 0.434 |
SEK99668.1 | SEL14142.1 | SAMN05421740_103200 | SAMN05421740_103629 | Outer membrane receptor proteins, mostly Fe transport. | Outer membrane protein beta-barrel domain-containing protein. | 0.610 |
SEK99668.1 | SEL91893.1 | SAMN05421740_103200 | SAMN05421740_11392 | Outer membrane receptor proteins, mostly Fe transport. | Wobble nucleotide-excising tRNase. | 0.592 |
SEL14142.1 | SEK17758.1 | SAMN05421740_103629 | SAMN05421740_10129 | Outer membrane protein beta-barrel domain-containing protein. | Hypothetical protein. | 0.410 |
SEL14142.1 | SEK24778.1 | SAMN05421740_103629 | SAMN05421740_101335 | Outer membrane protein beta-barrel domain-containing protein. | DNA-binding transcriptional regulator, AcrR family. | 0.479 |
SEL14142.1 | SEK64967.1 | SAMN05421740_103629 | SAMN05421740_102336 | Outer membrane protein beta-barrel domain-containing protein. | Hypothetical protein. | 0.425 |
SEL14142.1 | SEK99668.1 | SAMN05421740_103629 | SAMN05421740_103200 | Outer membrane protein beta-barrel domain-containing protein. | Outer membrane receptor proteins, mostly Fe transport. | 0.610 |
SEL14142.1 | SEL91893.1 | SAMN05421740_103629 | SAMN05421740_11392 | Outer membrane protein beta-barrel domain-containing protein. | Wobble nucleotide-excising tRNase. | 0.727 |
SEL33349.1 | SEL91893.1 | SAMN05421740_104305 | SAMN05421740_11392 | Sugar phosphate isomerase/epimerase. | Wobble nucleotide-excising tRNase. | 0.534 |
SEL91871.1 | SEL91893.1 | SAMN05421740_11391 | SAMN05421740_11392 | Exonuclease SbcC. | Wobble nucleotide-excising tRNase. | 0.656 |
SEL91871.1 | SEL91912.1 | SAMN05421740_11391 | SAMN05421740_11393 | Exonuclease SbcC. | Predicted ATP-dependent endonuclease of the OLD family, contains P-loop ATPase and TOPRIM domains. | 0.583 |
SEL91871.1 | sbcD | SAMN05421740_11391 | SAMN05421740_11390 | Exonuclease SbcC. | Exodeoxyribonuclease I subunit D; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family. | 0.999 |
SEL91893.1 | SEK17758.1 | SAMN05421740_11392 | SAMN05421740_10129 | Wobble nucleotide-excising tRNase. | Hypothetical protein. | 0.542 |
SEL91893.1 | SEK24778.1 | SAMN05421740_11392 | SAMN05421740_101335 | Wobble nucleotide-excising tRNase. | DNA-binding transcriptional regulator, AcrR family. | 0.432 |
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