STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEL92926.1Repeat domain-containing protein. (413 aa)    
Predicted Functional Partners:
SEL92950.1
Protein of unknown function.
       0.523
SEL73845.1
Subtilase family protein.
    
  0.449
SEK33122.1
DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family.
    
   0.448
SEL05162.1
Conserved repeat domain-containing protein/gliding motility-associated C-terminal domain-containing protein.
    
  0.429
SEK35661.1
Hypothetical protein.
    
   0.426
SEK17929.1
Putative collagen-binding domain of a collagenase.
  
 
   0.424
SEK19058.1
Putative membrane-bound dehydrogenase domain-containing protein.
    
  0.419
SEK18355.1
Outer membrane cobalamin receptor protein.
  
 
   0.412
SEL76440.1
Hypothetical protein.
  
 
   0.412
Your Current Organism:
Parapedobacter koreensis
NCBI taxonomy Id: 332977
Other names: KCTC 12643, LMG 23493, LMG:23493, P. koreensis, Parapedobacter koreensis Kim et al. 2007, Pedobacter sp. WPCB189, strain Jip14
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.