STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEL92967.1Uncharacterized iron-regulated membrane protein. (439 aa)    
Predicted Functional Partners:
SEK30480.1
Iron complex outermembrane recepter protein.
 
    0.640
SEK78263.1
Iron complex outermembrane recepter protein.
  
    0.618
SEL42192.1
Iron complex outermembrane recepter protein.
 
    0.592
SEK21087.1
Iron complex outermembrane recepter protein.
  
    0.574
SEL15419.1
Sulfite reductase (ferredoxin).
     
 0.557
SEK78409.1
Iron complex outermembrane recepter protein.
  
    0.521
SEL92950.1
Protein of unknown function.
       0.486
SEK36649.1
Iron complex outermembrane recepter protein.
  
  
 0.477
SEL99351.1
TonB-dependent siderophore receptor.
  
    0.469
SEK18519.1
Outer membrane cobalamin receptor protein.
 
    0.419
Your Current Organism:
Parapedobacter koreensis
NCBI taxonomy Id: 332977
Other names: KCTC 12643, LMG 23493, LMG:23493, P. koreensis, Parapedobacter koreensis Kim et al. 2007, Pedobacter sp. WPCB189, strain Jip14
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.