STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEL94895.1PIN domain nuclease, a component of toxin-antitoxin system (PIN domain). (133 aa)    
Predicted Functional Partners:
SEL94919.1
Protein of unknown function DUF104.
       0.789
SEK78613.1
tRNA(fMet)-specific endonuclease VapC.
  
     0.615
SEK26865.1
Predicted nuclease of the RNAse H fold, HicB family.
  
     0.449
SEL29870.1
Hypothetical protein.
  
     0.444
vapC
Hypothetical protein/tRNA(fMet)-specific endonuclease VapC; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.
  
     0.439
SEL94944.1
Hypothetical protein.
       0.426
SEL95960.1
Uncharacterized conserved protein, DUF433 family.
  
     0.403
Your Current Organism:
Parapedobacter koreensis
NCBI taxonomy Id: 332977
Other names: KCTC 12643, LMG 23493, LMG:23493, P. koreensis, Parapedobacter koreensis Kim et al. 2007, Pedobacter sp. WPCB189, strain Jip14
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.