STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEL95711.1Hypothetical protein. (169 aa)    
Predicted Functional Partners:
SEL95689.1
Hypothetical protein.
       0.848
SEL95727.1
Hypothetical protein.
       0.848
SEL95650.1
Hypothetical protein.
       0.800
SEL95631.1
Type IV pilus assembly protein PilQ; Belongs to the bacterial secretin family.
       0.784
SEL95669.1
Hypothetical protein.
       0.771
SEL95753.1
Hypothetical protein.
       0.718
SEL95607.1
Hypothetical protein.
       0.712
SEL95774.1
Hypothetical protein.
       0.539
SEL95793.1
Hypothetical protein.
       0.539
SEL95805.1
Hypothetical protein.
       0.458
Your Current Organism:
Parapedobacter koreensis
NCBI taxonomy Id: 332977
Other names: KCTC 12643, LMG 23493, LMG:23493, P. koreensis, Parapedobacter koreensis Kim et al. 2007, Pedobacter sp. WPCB189, strain Jip14
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.